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At this place we provide an overview of the various PhD Theses produced within Swammerdam Institute. A link to the full text of the thesis is provided. Theses from before 2016 are available via dare.uva.nl.
Daniel Amado Ruiz

Your health is in your head

Social status impacts T-cell responses through synapse strength in prefrontal cortex

 

07 September 2026

 

Supervisors: H.W.H.G. Kessels; A.N.M. Schumacher
Research Group: Cellular and Circuit Neuroscience
Uva DARE: This thesis online

Shijia Li

Systems approaches to the infant gut microbiota

From temporal dynamics to metabolic interventions

 

07 July 2026

 

Supervisors: S. Brul; R. KortM.T. WortelJ.A. Westerhuis
Research Group: Molecular Biology & Microbial Food Safety
Uva DARE: This thesis online

Jeen Engelenburg

Resident immunity in the multiple sclerosis brain

 

 

06 July 2026

 

Supervisors: .I. HuitingaJ. Hamann; J.J.F.M. Smolders
Research Group: Brain Plasticity
Uva DARE: This thesis online

Xiaolong Zhong

Plant domestication reshapes rhizosphere microbiome-mediated adaptation to nitrogen stress

 

 

02 July 2026

 

Supervisors: H.J. BouwmeesterL. Dong
Research Group: Plant Hormone Biology
Uva DARE: This thesis online

Davar Abedini

Chemical dialogues in the rhizosphere

Interactions between solanaceous crops, their microbiome, and eavesdropping pathogens

 

11 June 2026

 

Supervisors: H.J. BouwmeesterL. Dong
Research Group: Plant Hormone Biology
Uva DARE: This thesis online

Clara Siebert

Regional diversity of outer radial glia

Characterization of a novel oRG-like progenitor in the human developing ganglionic eminences

 

27 May 2026

 

Supervisors: .M.P. Smidt; A.R. Kriegstein; M.F.M. Hoekman
Research Group: Molecular Neuroscience
Uva DARE: This thesis online

Hanne van der Heijden

Wired for pain, shaped by the mind

Interactions between pain and psychopathology in pediatric and adult patient populations

 

07 May 2026

 

Supervisors: H.W.H.G. Kessels; J. Upadhyay
Research Group: Cellular and Circuit Neuroscience
Uva DARE: This thesis online

Lissy-Anne Denkers

Insight on the inside

Phloem-based whitefly resistance in tomato

 

01 May 2026

 

Supervisors: .R.C. SchuurinkM.A. Haring; P.M. Bleeker
Research Group:  Plant Physiology
Uva DARE: This thesis online

Amber Penning

Small RNA, big impact

Profiling the therapeutic potential of microRNA-132 in Alzheimer's disease

 

22 April 2026

 

Supervisors: .I. HuitingaP.J. Lucassen; E. Salta; C.P. Fitzsimons
Research Group: Brain Plasticity
Uva DARE: This thesis online

Pietro Zocca

Tangled in transcription

The web of transcription factors regulating tomato type VI glandular trichome development and specialized metabolsim

 

10 April 2026

 

Supervisors: .R.C. SchuurinkM.A. Haring
Research Group:  Plant Physiology
Uva DARE: This thesis online

Longjiao Chen

from molecule to microbe:

Molecular dynamics guided analysis of Bacillus subtilis spore germination mechanisms

 

30 March 2026

 

Supervisors: S. Brul; P. Setlow; J. Vreede
Research Group: Molecular Biology & Microbial Food Safety
Uva DARE: This thesis online

Stefan Slamanig

Development of an intranasal SARS-CoV-2 vaccine

Implementing the Newcastle disease virus vector platform

 

3 March 2026

 


Supervisors: S.M. van Ham; P. Palese
Research Group:  Biological Immunology
Uva DARE: This thesis online

Wijnand Schravesande

Virus interactions clearing the path towards symptom development in Lettuce big-vein disease

 

 

27 February 2026

 

 

Supervisors: H.A. van den Burg; A. Verhage
Research Group: Molecular Plant Pathology
Uva DARE: This thesis online

Kwangjun Lee

Toward biologically plausible predictive coding

From spiking neurons to cortical microcircuits and cortico-subcortical loops

 

18 February 2026

 


Supervisors:C.M.A. PennartzJ.F. Mejias
Research Group: Cognitive and Systems Neuroscience
Uva DARE: This thesis online

Christine Kreher

A needle in a haystack

Antigen-specific CD4T cell responses in physiological and pathological contexts

 

16 February 2026

 


Supervisors: S.M. van Ham; J.A. ten Brinke
Research Group:  Biological Immunology
Uva DARE: This thesis online

Max Guillaume

Exploring growth-coupled production designs in Synechocystis sp. PCC 6803 to combat phenotypic instability

 

12 February 2026

 


Supervisors:L.W. HamoenF. Branco dos Santos
Research Group: Bacterial Cell Biology and Physiology Groups
Uva DARE: This thesis online

Julien Fiorilli

Rhythmic revelations

Neural representations and oscillatory dynamics in the cortico-hippocampal system

 

30 January 2026

 


Supervisors: C.M.A. PennartzU. Olcese
Research Group: Cognitive and Systems Neuroscience
Uva DARE: This thesis online

Werner van der Meer

Tension in the Tunnel

Endothelial architecture and signalling during leukocyte extravasation

 

28 January 2026

 


Supervisors: J.D. van BuulJ. Goedhart
Research Group: Molecular Cytology
Uva DARE: This thesis online

Roel van der Ploeg

Microbiome data analysis using multi-way methods

 

 

27 January 2026

 

Supervisors:A.K. SmildeJ.A. WesterhuisA.U.S. Heintz Buschart
Research Group: Biosystems Data Analysis
Uva DARE: This thesis online

Xinyu Wang

De novo acquisition of antimicrobial resistance in six bacterial species from the food chain

 

22 January 2026

 


Supervisors: B. ter KuileS. BrulM.J. JonkerG. Dugar
Research Group: Molecular Biology & Microbial Food Safety
Uva DARE: This thesis online