Prof. dr. A.D.J. (Aalt-Jan) van Dijk
Faculty of Science
Swammerdam Institute for Life Sciences
Visiting address
- Science Park 904
- Room number: C2.110
Postal address
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Postbus 1212
1000 BE Amsterdam
Contact details
Social media
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Profile
My research involves systems biology, modelling and statistical analysis of networks, and bioinformatics analysis of proteins and DNA. This involves in particular a lot of machine learning, for example predicting properties of enzymes or predicting interactions between proteins using their structures.
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Publications
2025
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16. https://doi.org/10.1016/j.cell.2025.03.033
2024
- Noordijk, B., Garcia Gomez, M. L., ten Tusscher, K. H. W. J., de Ridder, D., van Dijk, A. D. J., & Smith, R. W. (2024). The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology. Frontiers in Systems Biology, 4, Article 1407994. https://doi.org/10.3389/fsysb.2024.1407994 [details]
- Sun, W., Zhang, Z., Bonnema, G., Wang, X., & van Dijk, A. D. J. (2024). Gene expression, transcription factor binding and histone modification predict leaf adaxial–abaxial polarity related genes. Horticultural Plant Journal, 10(4), 971-982. https://doi.org/10.1016/j.hpj.2024.06.002 [details]
- Thoris, K., Correa Marrero, M., Fiers, M., Lai, X., Zahn, I. E., Jiang, X., Mekken, M., Busscher, S., Jansma, S., Nanao, M., De Ridder, D., Van Dijk, A. D. J., Angenent, G. C., Immink, R. G. H., Zubieta, C., & Bemer, M. (2024). Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis. Nucleic Acids Research, 52(21), 13290-13304. https://doi.org/10.1093/nar/gkae963
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Ancillary activities
- No ancillary activities
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16.