Prof. dr. A.D.J. (Aalt-Jan) van Dijk
Faculty of Science
Swammerdam Institute for Life Sciences
Visiting address
- Science Park 904
- Room number: C2.110
Postal address
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Postbus 1212
1000 BE Amsterdam
Contact details
Social media
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Profile
My research involves systems biology, modelling and statistical analysis of networks, and bioinformatics analysis of proteins and DNA. This involves in particular a lot of machine learning, for example predicting properties of enzymes or predicting interactions between proteins using their structures.
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Publications
2025
- Avagyan, V., Boer, M. P., Solin, J., van Dijk, A. D. J., Bustos-Korts, D., van Rossum, B. J., Ramakers, J. J. C., van Eeuwijk, F., & Kruijer, W. (2025). Penalized factorial regression as a flexible and computationally attractive reaction norm model for prediction in the presence of GxE. Theoretical and Applied Genetics, 138(4), Article 88. https://doi.org/10.1007/s00122-025-04865-4
- Cheng, X., Yan, Z., Li, Q., Schmitz, L., Yan, J., Ge, Y., Lan, Y., Zhao, Y., Wang, Y., Li, G., Liu, Y., Schneijderberg, M., Yang, L., Bian, H., van Dijk, A. D. J., Qin, L., Cao, Q., & Bisseling, T. (2025). Chinese chestnut did not induce negative plant soil feedback during centuries of growth. Science of the Total Environment, 970, Article 178883. https://doi.org/10.1016/j.scitotenv.2025.178883
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16. https://doi.org/10.1016/j.cell.2025.03.033
2024
- Bellinazzo, F., Nadal Bigas, J., Hogers, R. A. H., Kodde, J., van der Wal, F., Kokkinopoulou, P., Duijts, K. T. M., Angenent, G. C., van Dijk, A. D. J., van Velzen, R., & Immink, R. G. H. (2024). Evolutionary origin and functional investigation of the widely conserved plant PEBP gene STEPMOTHER OF FT AND TFL1 (SMFT). Plant Journal, 120(4), 1410-1420. https://doi.org/10.1111/tpj.17057
- Noordijk, B., Garcia Gomez, M. L., ten Tusscher, K. H. W. J., de Ridder, D., van Dijk, A. D. J., & Smith, R. W. (2024). The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology. Frontiers in Systems Biology, 4, Article 1407994. https://doi.org/10.3389/fsysb.2024.1407994 [details]
- Sun, W., Zhang, Z., Bonnema, G., Wang, X., & van Dijk, A. D. J. (2024). Gene expression, transcription factor binding and histone modification predict leaf adaxial–abaxial polarity related genes. Horticultural Plant Journal, 10(4), 971-982. https://doi.org/10.1016/j.hpj.2024.06.002 [details]
- Thoris, K., Correa Marrero, M., Fiers, M., Lai, X., Zahn, I. E., Jiang, X., Mekken, M., Busscher, S., Jansma, S., Nanao, M., De Ridder, D., Van Dijk, A. D. J., Angenent, G. C., Immink, R. G. H., Zubieta, C., & Bemer, M. (2024). Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis. Nucleic Acids Research, 52(21), 13290-13304. https://doi.org/10.1093/nar/gkae963
- van Es, S. W., Muñoz-Gasca, A., Romero-Campero, F. J., González-Grandío, E., de los Reyes, P., Tarancón, C., van Dijk, A. D. J., van Esse, W., Pascual-García, A., Angenent, G. C., Immink, R. G. H., & Cubas, P. (2024). A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1. New Phytologist, 241(3), 1193-1209. https://doi.org/10.1111/nph.19420
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Ancillary activities
- No ancillary activities
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16.